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New paper accepted at the Data Compression Conference 2022(DCC 22)
Published:
Our paper titled “Efficient CSTs for Terabyte-Sized Data” I co-authored with Marco Oliva, Davide Cenzato, Zsuzsanna Lipták, Travis Gagie, and Christina Boucher has been accepted at the Data Compression Conference 2022 (DCC 22).
Invited speaker at Pangenomics Bio Hacking 2021
Published:
I will be an invited speaker at the Pangenomics Bio Hacking 2021 and I will talk about my recent work on pangenomics.
New paper accepted at the 28th International Symposium on String Processing and Information Retrieval (SPIRE 2021)
Published:
Our paper titled “Computing the original eBWT faster, simpler, and with less memory” I co-authored with Christina Boucher, Davide Cenzato, Zsuzsanna Lipták, and Marinella Sciortino has been accepted at the 28th International Symposium on String Processing and Information Retrieval (SPIRE 2021).
New paper published in iScience
Published:
Our paper titled, “Pan-genomic Matching Statistics for Targeted Nanopore Sequencing” I co-authored with Omar Ahmed, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher, and Ben Langmead, has been published in iScience. [link]
New paper accepted at the RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-Seq 2021)
Published:
Our paper titled, “Pan-genomic Matching Statistics for Targeted Nanopore Sequencing” I co-authored with Omar Ahmed, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher, and Ben Langmead, has been accepted at the 11th RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-Seq 2021).
New paper published in the Journal of Experimental Algorithmics (JEA)
Published:
Our paper titled “Pattern Discovery in Colored Strings” I co-authored with Zsuzsanna Lipták and Simon J. Puglisi has been published in the Journal of Experimental Algorithmics (JEA). [link]
New paper accepted at the Data Compression Conference 2021(DCC 21)
Published:
Our paper titled “PHONI: Streamed Matching Statisticswith Multi-Genome References” I co-authored with Christina Boucher, Travis Gagie, Tomohiro I, Dominik Köppl, Ben Langmead, Giovanni Manzini, Gonzalo Navarro, and Alejandro Pacheco has been accepted at the Data Compression Conference 2021 (DCC 21).
New paper accepted at the Data Compression Conference 2021(DCC 21)
Published:
Our paper titled “Efficiently Merging r-indexes” I co-authored with Marco Oliva, Jouni Sirén, Giovanni Manzini, Tamer Kahveci, Travis Gagie, and Christina Boucher has been accepted at the Data Compression Conference 2021 (DCC 21).
New paper accepted at the 25th International Conference On Research In Computational Molecular Biology (RECOMB21)
Published:
Our paper titled “MONI: A Pangenomics Index for Finding MEMs” I co-authored with Christina Boucher, Travis Gagie, Ben Langmead, and Marco Oliva has been accepted at the 25th International Conference On Research In Computational Molecular Biology (RECOMB21).
New paper accepted at the SIAM Symposium on Algorithm Engineering and Experiments (ALENEX21)
Published:
Our paper titled “PFP Compressed Suffix Trees” I co-authored with Christina Boucher, Ondřej Cvacho, Travis Gagie, Jan Holub, Giovanni Manzini, and Gonzalo Navarro has been accepted at the SIAM Symposium on Algorithm Engineering and Experiments (ALENEX21).
New paper accepted at the 47th International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM) 2021
Published:
Our paper titled “On the Redundancy of D-ary Fano codes” I co-authored with Ferdinando Cicalese has been accepted at the 47th International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM) 2021.
New paper accepted at the 27th International Symposium on String Processing and Information Retrieval (SPIRE) 2020
Published:
Our paper titled “Tailoring r-index for metagenomics” I co-authored with Dustin Cobas and Veli Mäkinen has been accepted at the 27th International Symposium on String Processing and Information Retrieval (SPIRE) 2020.
New paper accepted at the 20th Workshop on Algorithms in Bioinformatics (WABI) 2020
Published:
Our paper titled “Fast and Efficient Rmap Assembly using the Bi-labelled de Bruijn Graph” I co-authored with Kingshuk Mukherjee, Leena Salmela, and Christina Boucher has been accepted at the 20th Workshop on Algorithms in Bioinformatics (WABI) 2020.
New paper accepted at the 18th Symposium on Experimental Algorithms (SEA) 2020
Published:
Our paper titled “Pattern Discovery in Colored Strings” I co-authored with Zsuzsanna Lipták and Simon J. Puglisi has been accepted at the 18th Symposium on Experimental Algorithms (SEA 2020).
Publicity chair of SPIRE 2020
Published:
I am the publicity chair of the 27th International Symposium on String Processing and Information Retrieval (SPIRE 2020) that will take place on October 13-15th, 2020 in Orlando, FL, United States.
Talk at Monday Meetings
Published:
I will give a talk on “Empirical entropy and Burrows-Wheeler transform” at the Monday Meeting that will take place on 13/01/2020 at 18:00.
ITACPC Warmup Round #4
Published:
I am organizing the ITACPC Warmup Round #4 that will take place on 14/12/2019 at 9:30 in collaboration with William Di Luigi.
Google Hash Code Hub
Published:
I will organize the Google Hash Code Hub at the University of Verona.
Dictionary compression lectures
Published:
I will give 4 lectures (8 hours) on “Dictionary compression” in the course Data Compression Techniques held by Prof. Simon J. Puglisi.
Talk at WCTA 19
Published:
I will present “Practical mergeable dictionaries” at WCTA 19 in Segovia, Spain. This is a joint work with Simon J. Puglisi.
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.